94500-6 SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection. Results may be based on multiple assays to determine the presence of the virus in a specimen.
Source: Regenstrief LOINC

Part Descriptions

LP417540-4   SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.

The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Source: LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 RNA Resp Ql NAA+probe

Display Name

SARS-CoV-2 (COVID-19) RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19), Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Common Test Rank Get Info

65

Example Answer List LL2021-5

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 2019 Novel Coronavirus
• 2019-nCoV
• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• COVID19
• COVID-19
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• SARS Coronavirus 1
• SARS-CoV
• SARS-CoV-1
• SARS-CoV-2
• Screen
• SDA
• Severe Acute Respiratory Syndrome
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Viral Pneumonias
• Wuhan coronavirus

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97104-4 SARS-CoV-2 (COVID-19) ORF1ab region [Units/volume] (viral load) in Upper respiratory specimen by NAA with probe detection

Term Description

Quantitative detection of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in upper respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 ORF1ab region

Property

ACnc

Time

Pt

System

Respiratory system specimen.upper

Scale

Qn

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 ORF1ab U resp NAA+probe-aCnc

Display Name

SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe Qn (Upper resp)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19) ORF1ab region, Upper respiratory

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.77

Change Reason

Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;

Order vs. Observation

Both

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 2019 Novel Coronavirus
• 2019-nCoV
• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Arbitrary concentration
• Breathing
• Corona virus
• COVID19
• COVID-19
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• PCR
• PH
• Point in time
• Polymerase chain reaction
• Probe amp
• Probe with ampification
• Probe with target amplification
• Public Health
• PublicHealth
• QBR
• QNT
• Quan
• Quant
• Quantitative
• Random
• RS
• SARS Coronavirus 1
• SARS-CoV
• SARS-CoV-1
• SARS-CoV-2
• SARS-CoV-2 ORF1ab
• SDA
• Severe Acute Respiratory Syndrome
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Up
• Upper resp
• Viral load
• Viral Pneumonias
• Wuhan coronavirus

Example Units

31208-2 Specimen source identified

Observation Required in Panel

Optional

Type of Entry

Question expects user entry - requires response [Q]

Fully-Specified Name

Component

Specimen source

Property

Prid

Time

Pt

System

XXX

Scale

Nom

Method

Additional Names

Short Name

Specimen source

Display Name

Specimen source Nom (Specimen)

Consumer Name Alpha Get Info

Specimen source, Specimen

Basic Attributes

Class

SPEC

Type

Laboratory

First Released

Version 2.07

Last Updated

Version 2.73

Order vs. Observation

Observation

Common Test Rank Get Info

1

Member of these Panels

Language Variants Get Info

Related Names

• Identity or presence
• Misc
• Miscellaneous
• Nominal
• Other
• Point in time
• Random
• Spec
• Srce
• To be specified in another part of the message
• Unspecified

72826-1 Race OMB.1997

Term Description

This term is used for reporting race based on the Office of Management and Budget (OMB), Revisions to the Standards for the Classification of Federal Data on Race and Ethnicity (Oct. 30, 1997).
Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

Race

Property

Type

Time

Pt

System

^Patient

Scale

Nom

Method

OMB.1997

Additional Names

Short Name

Race OMB.1997

Basic Attributes

Class

CLIN

Type

Clinical

First Released

Version 2.42

Last Updated

Version 2.44

Order vs. Observation

Both

HL7^® Attributes

HL7^® Field ID

PID-10

Normative Answer List LL2359-9

Member of these Panels

Language Variants Get Info

Related Names

• CLIN
• Ethnicity
• Nominal
• Point in time
• Random
• Typ

69490-1 Ethnicity OMB.1997

Term Description

This term is used for reporting the ethnicity based on classifications provided by the Office of Management and Budget (OMB), Revisions to the Standards for the Classification of Federal Data on Race and Ethnicity (Oct. 30, 1997).
Source: Regenstrief LOINC

Fully-Specified Name

Component

Ethnicity

Property

Type

Time

Pt

System

^Patient

Scale

Nom

Method

OMB.1997

Additional Names

Short Name

Ethnicity OMB.1997

Basic Attributes

Class

CLIN

Type

Clinical

First Released

Version 2.38

Last Updated

Version 2.73

Change Reason

Added method of 'OMB.1997' since the answer list is the same as OMB's ethnicity answer list (1997). OMB provides standards that promote uniformity and comparability for data on race and ethnicity throughout the U.S. Federal Government. These standards are widely adopted, including in the EHR Meaningful Use program within the U.S.

Common Test Rank Get Info

5376

HL7^® Attributes

HL7^® Field ID

PID-22

Normative Answer List LL2361-5

Member of these Panels

Language Variants Get Info

Related Names

• CLIN
• Nominal
• Point in time
• Random
• Typ