74408-6
Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen
Active
74475-5 Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Interpretation] in Specimen Qualitative by NAA with probe detection
Term Description
Overall interpretation of presence of MERs-CoV RNA based on the findings from gene-specific PCR assays. The submitter's assays target RNA from the N2 [LOINC: 74473-0], N3 [LOINC: 74472-2], and upE [LOINC: 74474-8] genes in respiratory specimens (nasopharyngeal, oropharyngeal swabs, sputum, lower respiratory aspirates/washes), serum, and stool. This code was created for, but not limited in use to, the submitter's primer and probe set, NCV-2012 rRT-PCR (CDC; Catalog #KT0136),
Source: Regenstrief LOINC
Part Descriptions
LP173753-7 Middle East respiratory syndrome coronavirus
Middle East Respiratory Syndrome (MERS) is an illness caused by the virus Middle East Respiratory Syndrome Coronovirus (MERS-CoV). The illness was first reported in Saudi Arabia in 2012, but was later found to have originated in Jordan in 2012. MERS has been found in camels leading to speculation that they may be the initial reservoir for the virus. The largest outbreak of MERS that has occurred outside of the Arabian Peninsula was in the Republic of Korea in 2015 and was linked to an individual who had been traveling in the Arabian Peninsula. The virus is probably spread through respiratory secretions from infected individuals though the exact mode of transmission is under investigation. Infection with MERS begins with an incubation period of 5-6 days followed by a severe acute illness that involves fever, shortness of breath and for patients with comorbidities or reduced immunity can lead to pneumonia and kidney failure. The mortality rate of MERS is 3-4 out of 10 people who are infected, though most of the people who die have underlying conditions. In addition, some people experience only cold-like symptoms and others have no symptoms at all. In the United States, most state laboratories are approved to test for MERS-CoV using the real-time reverse transcription-PCR assay developed by the CDC. The assay can be run on respiratory, serum and stool specimens.[CDC: coronavirus/mers]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Middle east respiratory syndrome coronavirus RNA
- Property
- Imp
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MERS-CoV RNA Spec NAA+probe-Imp
- Display Name
- MERS-CoV RNA NAA+probe Ql (Specimen) [Interp]
- Consumer Name Alpha Get Info
- Middle East respiratory syndrome coronavirus (MERS-CoV), Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.46
- Last Updated
- Version 2.69
- Order vs. Observation
- Both
Example Answer List LL1055-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 | ||
| Equivocal Copyright http://snomed.info/sct ID:42425007 Equivocal (qualifier value) | LA11885-3 | ||
| Inconclusive Copyright http://snomed.info/sct ID:419984006 Inconclusive (qualifier value) | LA9663-1 | ||
| Specimen unsatisfactory for evaluation Copyright http://snomed.info/sct ID:125154007 Specimen unsatisfactory for evaluation (finding) | LA13548-5 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 74408-6 | Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: MERS-Coronavirus RNA ql. /SM PCR |
| de-DE | German (Germany) | Middle East respiratory syndrome coronavirus (MERS CoV) RNA: |
| es-ES | Spanish (Spain) | Coronavirus del sindrome respiratorio de Oriente medio RNA: |
| es-MX | Spanish (Mexico) | Síndrome respiratorio de Oriente Medio coronavirus ARN: |
| fr-FR | French (France) | Coronavirus MERS ARN: |
| it-IT | Italian (Italy) | Sindrome respiratoria mediorientale da Coronavirus (MERS) RNA: Synonyms: Impressione/interpretazione di studio Microbiologia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Middle East Respiratory Syndrome-coronavirus RNA: Synonyms: MERS-coronavirus MERS-coronavirus; |
| pt-BR | Portuguese (Brazil) | Medio Oriente sindrome respiratória coronavírus RNA: |
| ru-RU | Russian (Russian Federation) | Ближневосточный респираторный синдром коронавирус РНК: Synonyms: Впечатление/интерпретация исследования ДНК проба; |
| tr-TR | Turkish (Turkey) | Orta doğu solunum sendromu koronovirüs (MERS-CoV) RNA: |
| zh-CN | Chinese (China) | 中东呼吸综合征冠状病毒 RNA: Synonyms: 不明的; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
74474-8 Middle East respiratory syndrome coronavirus (MERS-CoV) upE gene RNA [Presence] in Specimen by NAA with probe detection
Term Description
Real-time PCR is performed to detect the presence of MERS-CoV RNA in respiratory specimens (nasopharyngeal, oropharyngeal swabs, sputum, lower respiratory aspirates/washes), serum, and stool. This code was created for, but not limited in use to, the submitter's primer and probe set, NCV-2012 rRT-PCR (CDC; Catalog #KT0136), which targets the nucleocapsid protein gene (NCV.N2 and NCV.N3) and upstream the MERS-CoV envelope protein gene (NCV.upE).
Source: Regenstrief LOINC
Part Descriptions
LP175713-9 Middle East respiratory syndrome coronavirus upE gene
The Middle East respiratory syndrome coronavirus (MERS-CoV), also termed NCV-2012, EMC/2012 or SARS-like virus, is a Betacoronavirus, a novel coronavirus (nCoV). Coronaviruses commonly cause respiratory illnesses, including the common cold, but the MERS-CoV is more lethal. The first MERS-CoV case was reported in September 2012 in the Middle East. Testing is currently (2013) restricted to patients exhibiting the clinical symptoms of MERS-CoV infection and having the epidemiological risk factors. Several highly sensitive, confirmatory real-time RT-PCR assays exist for rapid identification of MERS-CoV from patient samples (such as bronchoalveolar lavage or sputum). Targets include upE (targets elements upstream of the E gene), 1A (targets the ORF1a gene) and nucleocapsid protein genes (specific to MERS-CoV).
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, MERS-CoV (Wikipedia)
Fully-Specified Name
- Component
- Middle east respiratory syndrome coronavirus upE gene RNA
- Property
- PrThr
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MERS-CoV upE RNA Spec Ql NAA+probe
- Display Name
- MERS-CoV upE gene RNA NAA+probe Ql (Specimen)
- Consumer Name Alpha Get Info
- Middle East respiratory syndrome coronavirus (MERS-CoV), Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.46
- Last Updated
- Version 2.69
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 74408-6 | Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Middle East respiratory syndrome Coronavirus (MERS CoV) upE-Gen RNA: |
| es-MX | Spanish (Mexico) | Síndrome respiratorio de Oriente Medio coronavirus gen upE ARN: |
| es-ES | Spanish (Spain) | Gen del sindrome respiratorio por Coronavirus de Oriente medio proteína E RNA: |
| fr-FR | French (France) | Coronavirus MERS ARN gène upE: |
| it-IT | Italian (Italy) | Sindrome respiratoria mediorientale da Coronavirus (MERS), gene upE RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Middle East Respiratory Syndrome-coronavirus upE-gen RNA: Synonyms: MERS-coronavirus MERS-coronavirus upE-gen probe.amp.tar |
| pt-BR | Portuguese (Brazil) | Medio Oriente sindrome respiratória coronavírus upE gene RNA: |
| ru-RU | Russian (Russian Federation) | Ближневосточный респираторный синдром коронавирус upE ген РНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Orta doğu respiratuvar koronovirüs (MERS-CoV) upE geni RNA: Synonyms: Mevcut |
| zh-CN | Chinese (China) | 中东呼吸综合征冠状病毒 upE 基因 RNA: Synonyms: 不明的; |
74473-0 Middle East respiratory syndrome coronavirus (MERS-CoV) N2 gene RNA [Presence] in Specimen by NAA with probe detection
Term Description
Real-time PCR is performed to detect the presence of MERS-CoV RNA in respiratory specimens (nasopharyngeal, oropharyngeal swabs, sputum, lower respiratory aspirates/washes), serum, and stool. This code was created for, but not limited in use to, the submitter's primer and probe set, NCV-2012 rRT-PCR (CDC; Catalog #KT0136), which targets the nucleocapsid protein gene (NCV.N2 and NCV.N3) and upstream the MERS-CoV envelope protein gene (NCV.upE).
Source: Regenstrief LOINC
Part Descriptions
LP175714-7 Middle East respiratory syndrome coronavirus N2 gene
The Middle East respiratory syndrome coronavirus (MERS-CoV), also termed NCV-2012, EMC/2012 or SARS-like virus, is a Betacoronavirus, a novel coronavirus (nCoV). Coronaviruses commonly cause respiratory illnesses, including the common cold, but the MERS-CoV is more lethal. The first MERS-CoV case was reported in September 2012 in the Middle East. Testing is currently (2013) restricted to patients exhibiting the clinical symptoms of MERS-CoV infection and having the epidemiological risk factors. Several highly sensitive, confirmatory real-time RT-PCR assays exist for rapid identification of MERS-CoV from patient samples (such as bronchoalveolar lavage or sputum). Targets include upE (targets elements upstream of the E gene), 1A (targets the ORF1a gene) and nucleocapsid protein genes (specific to MERS-CoV).
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, MERS-CoV (Wikipedia)
Fully-Specified Name
- Component
- Middle east respiratory syndrome coronavirus N2 gene RNA
- Property
- PrThr
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MERS-CoV N2 RNA Spec Ql NAA+probe
- Display Name
- MERS-CoV N2 gene RNA NAA+probe Ql (Specimen)
- Consumer Name Alpha Get Info
- Middle East respiratory syndrome coronavirus (MERS-CoV), Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.46
- Last Updated
- Version 2.69
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 74408-6 | Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Middle East respiratory syndrome Coronavirus (MERS CoV) N2-Gen RNA: |
| es-MX | Spanish (Mexico) | Síndrome respiratorio de Oriente Medio coronavirus gen N2 ARN: |
| es-ES | Spanish (Spain) | Gen del sindrome respiratorio por Coronavirus de Oriente medio tipo N2 RNA: |
| fr-FR | French (France) | Coronavirus MERS ARN gène N2: |
| it-IT | Italian (Italy) | Sindrome respiratoria mediorientale da Coronavirus (MERS), gene N2 RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Middle East Respiratory Syndrome-coronavirus N2 gen RNA: Synonyms: MERS-coronavirus MERS-coronavirus N2 probe.amp.tar |
| pt-BR | Portuguese (Brazil) | Medio Oriente sindrome respiratória coronavírus N2 gene RNA: |
| ru-RU | Russian (Russian Federation) | Ближневосточный респираторный синдром коронавирус N2 ген РНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Orta doğu respiratuvar koronovirüs N2 geni RNA: Synonyms: Mevcut |
| zh-CN | Chinese (China) | 中东呼吸综合征冠状病毒 N2 基因 RNA: Synonyms: 不明的; |
74472-2 Middle East respiratory syndrome coronavirus (MERS-CoV) N3 gene RNA [Presence] in Specimen by NAA with probe detection
Term Description
Real-time PCR is performed to detect the presence of MERS-CoV RNA in respiratory specimens (nasopharyngeal, oropharyngeal swabs, sputum, lower respiratory aspirates/washes), serum, and stool. This code was created for, but not limited in use to, the submitter's primer and probe set, NCV-2012 rRT-PCR (CDC; Catalog #KT0136), which targets the nucleocapsid protein gene (NCV.N2 and NCV.N3) and upstream the MERS-CoV envelope protein gene (NCV.upE).
Source: Regenstrief LOINC
Part Descriptions
LP175715-4 Middle East respiratory syndrome coronavirus N3 gene
The Middle East respiratory syndrome coronavirus (MERS-CoV), also termed NCV-2012, EMC/2012 or SARS-like virus, is a Betacoronavirus, a novel coronavirus (nCoV). Coronaviruses commonly cause respiratory illnesses, including the common cold, but the MERS-CoV is more lethal. The first MERS-CoV case was reported in September 2012 in the Middle East. Testing is currently (2013) restricted to patients exhibiting the clinical symptoms of MERS-CoV infection and having the epidemiological risk factors. Several highly sensitive, confirmatory real-time RT-PCR assays exist for rapid identification of MERS-CoV from patient samples (such as bronchoalveolar lavage or sputum). Targets include upE (targets elements upstream of the E gene), 1A (targets the ORF1a gene) and nucleocapsid protein genes (specific to MERS-CoV).
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, MERS-CoV (Wikipedia)
Fully-Specified Name
- Component
- Middle east respiratory syndrome coronavirus N3 gene RNA
- Property
- PrThr
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MERS-CoV N3 RNA Spec Ql NAA+probe
- Display Name
- MERS-CoV N3 gene RNA NAA+probe Ql (Specimen)
- Consumer Name Alpha Get Info
- Middle East respiratory syndrome coronavirus (MERS-CoV), Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.46
- Last Updated
- Version 2.69
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 74408-6 | Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Middle East respiratory syndrome Coronavirus (MERS CoV) N3-Gen RNA: |
| es-MX | Spanish (Mexico) | Síndrome respiratorio de Oriente Medio coronavirus gen N3 ARN: |
| es-ES | Spanish (Spain) | Gen del sindrome respiratorio por Coronavirus de Oriente medio tipo N3 RNA: |
| fr-FR | French (France) | Coronavirus MERS ARN gène N3: |
| it-IT | Italian (Italy) | Sindrome respiratoria mediorientale da Coronavirus (MERS), gene N3 RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Middle East Respiratory Syndrome-coronavirus N3 gen RNA: Synonyms: MERS-coronavirus MERS-coronavirus N3 probe.amp.tar |
| pt-BR | Portuguese (Brazil) | Medio Oriente sindrome respiratória coronavírus N3 gene RNA: |
| ru-RU | Russian (Russian Federation) | Ближневосточный респираторный синдром коронавирус N3 ген РНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Orta doğu respiratuvar sendrom koronavirüs N3 geni RNA: Synonyms: Mevcut |
| zh-CN | Chinese (China) | 中东呼吸综合征冠状病毒 N3 基因 RNA: Synonyms: 不明的; |