85795-3
Rubella virus E1 gene and genotype panel - Specimen
Active
85796-1 Rubella virus E1 gene [Cycle Threshold #] in Specimen by NAA with probe detection
Term Description
Quantitative (Ct) result for detection of nucleic acids within the E1 region of Rubella virus RNA in various clinical samples or from cell culture.
Source: Regenstrief LOINC
Part Descriptions
LP248008-7 Rubella virus E1 gene
Rubella virus genome consists of enveloped, non-segmented, positive sense RNA. It encodes three structural and two non-structural proteins. The structural proteins include capsid (C) and two glycoproteins, E2 and E1. The non-structural proteins include P150 and P90. PMID: 23351667 Genetic characterization of RuV genomes contributes to virus surveillance efforts. Genotyping is based on comparison of a 739 nucleotide sequence in the E1 coding region to reference virus sequences. According to the WHO nomenclature for Rubella virus, genotype names are indicated by a number (1 or 2) that indicates the clade that the genotype belongs to, followed by a letter that represents grouping within the clade. For genotypes that are considered provisional, a lower case letter is used, and when a genotype goes from provisional to accepted status, the letter is changed to upper case. For example, provisional genotypes 1h, 1i and 1j were established in 2007 and upgraded to 1H, 1I and 1J in 2013. [http://www.who.int/wer/2013/wer8832.pdf]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Rubella virus E1 gene
- Property
- ThreshNum
- Time
- Pt
- System
- XXX
- Scale
- Qn
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RUBV E1 Ct Spec Qn NAA+probe
- Display Name
- Rubella virus E1 gene NAA+probe (Specimen) [ThreshNum]
- Consumer Name Alpha Get Info
- Rubella virus E1 gene, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.61
- Last Updated
- Version 2.69
- Order vs. Observation
- Observation
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 85795-3 | Rubella virus E1 gene and genotype panel - Specimen |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32766-4 | Rubella virus |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Röteln-Virus E1-Gen: |
| es-MX | Spanish (Mexico) | Gen E1 del virus de la rubéola: |
| es-ES | Spanish (Spain) | Panel del Gen E1 del virus de la Rubeola: Synonyms: Cuantitativo |
| fr-FR | French (France) | Rubéole virus E1 gène: |
| it-IT | Italian (Italy) | Rosolia virus, gene E1: Synonyms: Gene E1 virus della rosolia Limite di soglia Microbiologia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus della rosolia |
| nl-NL | Dutch (Netherlands) | Rubellavirus E1-gen: Synonyms: probe.amp.tar rodehondvirus rodehondvirus E1 gen |
| zh-CN | Chinese (China) | 风疹病毒 E1 基因: Synonyms: RUBV 不明的; |
Example Units
| Unit | Source |
|---|---|
| {Ct_value} | Example UCUM Units |
85690-6 Rubella virus genotype in Specimen
Part Descriptions
LP14416-9 Rubella virus
Rubella (also known as epidemic roseola, German measles, liberty measles or three-day measles) is a disease caused by the Rubella virus. It is often a mild illness, with symptoms of sore throat, low-grade fever, and a rash on the body. The virus usually enters the body through the nose or throat. Like most viruses living along the respiratory tract, it is transmitted from person to person by tiny droplets that are inhaled. Rubella can pose a serious risk if transmitted from a mother to her developing baby if a woman is infected while she is pregnant, especially during the first trimester. The baby is at risk for having congenital rubella syndrome (CRS). The most common symptoms of CRS include heart defects, deafness, cataracts, intellectual disabilities, and liver or spleen damage.[CDC: Rubella]
Source: Regenstrief LOINC
LP247714-1 Rubella virus genotype
Rubella virus genome consists of enveloped, non-segmented, positive sense RNA. It encodes three structural and two non-structural proteins. The structural proteins include capsid (C) and two glycoproteins, E2 and E1. The non-structural proteins include P150 and P90. PMID: 23351667 Genetic characterization of RuV genomes contributes to virus surveillance efforts. Genotyping is based on comparison of a 739 nucleotide sequence in the E1 coding region to reference virus sequences. According to the WHO nomenclature for Rubella virus, genotype names are indicated by a number (1 or 2) that indicates the clade that the genotype belongs to, followed by a letter that represents grouping within the clade. For genotypes that are considered provisional, a lower case letter is used, and when a genotype goes from provisional to accepted status, the letter is changed to upper case. For example, provisional genotypes 1h, 1i and 1j were established in 2007 and upgraded to 1H, 1I and 1J in 2013. [http://www.who.int/wer/2013/wer8832.pdf]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Rubella virus genotype
- Property
- Type
- Time
- Pt
- System
- XXX
- Scale
- Nom
- Method
Additional Names
- Short Name
- RUBV Gentyp Spec
- Display Name
- Rubella virus genotype (Specimen)
- Consumer Name Alpha Get Info
- Rubella virus genotype, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.61
- Last Updated
- Version 2.72
- Order vs. Observation
- Observation
Example Answer List LL4363-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Rubella virus genotype 1a | LA27186-8 | ||
| Rubella virus genotype 1B | LA27187-6 | ||
| Rubella virus genotype 1C | LA27188-4 | ||
| Rubella virus genotype 1D | LA27189-2 | ||
| Rubella virus genotype 1E | LA27190-0 | ||
| Rubella virus genotype 1F | LA27191-8 | ||
| Rubella virus genotype 1G | LA27192-6 | ||
| Rubella virus genotype 1H | LA27193-4 | ||
| Rubella virus genotype 1I | LA27194-2 | ||
| Rubella virus genotype 1J | LA27195-9 | ||
| Rubella virus genotype 2A | LA27196-7 | ||
| Rubella virus genotype 2B | LA27197-5 | ||
| Rubella virus genotype 2C | LA27198-3 | ||
| Other | LA46-8 | ||
| Unknown Copyright http://snomed.info/sct ID:261665006 Unknown (qualifier value) | LA4489-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 85795-3 | Rubella virus E1 gene and genotype panel - Specimen |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32766-4 | Rubella virus |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Röteln-Virus Genotyp: |
| el-GR | Greek (Greece) | Ιός ερυθράς γονότυπος: |
| es-ES | Spanish (Spain) | Virus de la Rubeola Genotipo: |
| es-MX | Spanish (Mexico) | Genotipo del virus de la rubéola: |
| et-EE | Estonian (Estonia) | Punetiseviirus genotüüp: Synonyms: Juhuslik Täpsustamata materjal |
| fr-BE | French (Belgium) | Virus de la rubéole Génotype: Synonyms: Génotype |
| fr-FR | French (France) | Rubéole virus génotype: |
| fr-CA | French (Canada) | Virus de la rubéole, Génotype: |
| it-IT | Italian (Italy) | Rosolia virus, genotipo: Synonyms: Microbiologia Punto nel tempo (episodio) Virus della rosolia |
| nl-NL | Dutch (Netherlands) | Rubellavirus genotype: Synonyms: rodehondvirus |
| pl-PL | Polish (Poland) | Wirus różyczki genotyp: Synonyms: Genotyp wirusa różyczki |
| ru-RU | Russian (Russian Federation) | Краснухи вирус генотип: Synonyms: Номинальный; |
| tr-TR | Turkish (Turkey) | Rubella virüsü genotip: Synonyms: Tür |
| zh-CN | Chinese (China) | 风疹病毒 基因型: Synonyms: RUBV 不明的; |
Third Party Copyright
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